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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu, Tsung-Cheng Chang, Joshua T. Mendell, Steven L. Salzberg
Johns Hopkins University Johns Hopkins Medicine The University of Texas Southwestern Medical Center
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生物医学Genomics and Phylogenetic Studies
RNA modifications and cancer · Molecular Biology Techniques and Applications
参考文献 33
NCBI Reference Sequences: current status, policy and new initiatives
被引 748Kim D. Pruitt, Tatiana Tatusova, William Klimke · Nucleic Acids Research · 2008
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly
被引 143Wei Li, Jianxing Feng, Tao Jiang · Journal of Computational Biology · 2011
Streaming fragment assignment for real-time analysis of sequencing experiments
被引 1,144Adam Roberts, Lior Pachter · Nature Methods · 2012
此处列出前 3 条
引用本文 15,889
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
被引 7,727Mihaela Pertea, Daehwan Kim, Geo Pertea · Nature Protocols · 2016
Shifting the limits in wheat research and breeding using a fully annotated reference genome
被引 3,426R. Appels, Kellye Eversole, Nils Stein · Science · 2018
A survey of best practices for RNA-seq data analysis
被引 2,945Ana Conesa, Pedro Madrigal, Sonia Tarazona · Genome biology · 2016
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